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  5. Nbi_g15286

Nbi_g15286


Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15286
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Adi_g107994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11071 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Aop_g35974 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38222.t1 Aspi01Gene38222 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g73283 MEE29 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00881 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Ehy_g09304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g23530.1 LOC_Os06g23530 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013414 EMB3011 RNA helicase *(Prp16) & original description: CDS=171-3614 0.03 OrthoFinder output from all 47 species
Solyc12g017700.2.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.04 OrthoFinder output from all 47 species
Solyc12g089010.3.1 EMB3011, Solyc12g089010 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 610 686
IPR011545 DEAD/DEAH_box_helicase_dom 68 220
IPR001650 Helicase_C 261 397
IPR007502 Helicase-assoc_dom 460 548
No external refs found!