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  5. Nbi_g15428

Nbi_g15428


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15428

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
Adi_g018966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g27276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06724 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025464 No alias not classified & original description: CDS=1-2154 0.03 OrthoFinder output from all 47 species
Azfi_s0036.g025743 No alias not classified & original description: CDS=1-2553 0.04 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.02 OrthoFinder output from all 47 species
Azfi_s0128.g048778 No alias not classified & original description: CDS=1-2676 0.04 OrthoFinder output from all 47 species
Azfi_s0171.g055669 No alias not classified & original description: CDS=1-2286 0.03 OrthoFinder output from all 47 species
Ceric.04G034400.1 Ceric.04G034400 not classified & original description: pacid=50632280... 0.03 OrthoFinder output from all 47 species
Ceric.09G087400.1 Ceric.09G087400 not classified & original description: pacid=50586781... 0.03 OrthoFinder output from all 47 species
Ceric.18G060200.1 Ceric.18G060200 not classified & original description: pacid=50621585... 0.03 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.03 OrthoFinder output from all 47 species
Dac_g14700 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42048 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46554 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Lfl_g04187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Msp_g33344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32640 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009076 No alias not classified & original description: CDS=1-1737 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009590 No alias not classified & original description: CDS=1-2562 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013068 No alias not classified & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025848 No alias not classified & original description: CDS=1-2184 0.03 OrthoFinder output from all 47 species
Sam_g05036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44069 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 580 626
IPR002885 Pentatricopeptide_repeat 781 828
IPR002885 Pentatricopeptide_repeat 74 122
IPR002885 Pentatricopeptide_repeat 150 176
IPR002885 Pentatricopeptide_repeat 352 378
IPR002885 Pentatricopeptide_repeat 857 878
IPR002885 Pentatricopeptide_repeat 380 407
IPR002885 Pentatricopeptide_repeat 179 209
IPR002885 Pentatricopeptide_repeat 683 711
IPR002885 Pentatricopeptide_repeat 756 778
IPR002885 Pentatricopeptide_repeat 280 303
IPR002885 Pentatricopeptide_repeat 655 678
IPR046848 E_motif 899 948
No external refs found!