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  5. Nbi_g15565

Nbi_g15565


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15565

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g07631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g12662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16630 OTP86 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g21679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36200 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36521 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36544 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30558 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28645 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29297 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene01610.t1 CRR22, Aspi01Gene01610 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16552.t1 EMB2261, Aspi01Gene16552 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16559.t1 EMB2261, Aspi01Gene16559 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0016.g014413 No alias not classified & original description: CDS=1-1530 0.05 OrthoFinder output from all 47 species
Azfi_s0063.g035406 CRR22 not classified & original description: CDS=1-1185 0.07 OrthoFinder output from all 47 species
Azfi_s0104.g044768 EMB2758 not classified & original description: CDS=1-1815 0.04 OrthoFinder output from all 47 species
Azfi_s0120.g046799 No alias not classified & original description: CDS=1-2385 0.05 OrthoFinder output from all 47 species
Azfi_s0184.g056534 OTP84 not classified & original description: CDS=1-2040 0.03 OrthoFinder output from all 47 species
Azfi_s0228.g059086 No alias not classified & original description: CDS=12-1547 0.05 OrthoFinder output from all 47 species
Azfi_s0908.g092257 No alias not classified & original description: CDS=1-1875 0.06 OrthoFinder output from all 47 species
Cba_g67793 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G019900.1 Ceric.02G019900 not classified & original description: pacid=50585305... 0.04 OrthoFinder output from all 47 species
Ceric.04G079600.1 OTP84, Ceric.04G079600 not classified & original description: pacid=50631214... 0.04 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.04 OrthoFinder output from all 47 species
Ceric.13G015700.1 Ceric.13G015700 not classified & original description: pacid=50636078... 0.04 OrthoFinder output from all 47 species
Ceric.17G035100.1 Ceric.17G035100 not classified & original description: pacid=50618094... 0.04 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.04 OrthoFinder output from all 47 species
Ceric.17G079000.1 Ceric.17G079000 not classified & original description: pacid=50617699... 0.04 OrthoFinder output from all 47 species
Ceric.19G049000.1 Ceric.19G049000 not classified & original description: pacid=50576332... 0.04 OrthoFinder output from all 47 species
Ceric.1Z148400.1 Ceric.1Z148400 not classified & original description: pacid=50637111... 0.04 OrthoFinder output from all 47 species
Ceric.22G014800.1 Ceric.22G014800 not classified & original description: pacid=50613770... 0.04 OrthoFinder output from all 47 species
Ceric.35G030500.1 Ceric.35G030500 not classified & original description: pacid=50580789... 0.04 OrthoFinder output from all 47 species
Ceric.39G007300.1 Ceric.39G007300 not classified & original description: pacid=50582343... 0.05 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g30253 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g48025 MEF21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g49996 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g05762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11652 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.05 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_138689g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Msp_g05679 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17400 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g46859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56906 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60394 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g59278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Smo105614 CRR2 Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
Smo107947 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Smo92426 EMB2758 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Spa_g06005 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g06160 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g10389 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16587 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g25219 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26362 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g39327 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g49732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54482 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06522 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 792 839
IPR002885 Pentatricopeptide_repeat 285 333
IPR002885 Pentatricopeptide_repeat 489 535
IPR002885 Pentatricopeptide_repeat 184 230
IPR002885 Pentatricopeptide_repeat 589 635
IPR002885 Pentatricopeptide_repeat 389 435
IPR002885 Pentatricopeptide_repeat 665 689
IPR002885 Pentatricopeptide_repeat 85 113
IPR002885 Pentatricopeptide_repeat 362 383
IPR002885 Pentatricopeptide_repeat 693 722
IPR002885 Pentatricopeptide_repeat 866 891
IPR002885 Pentatricopeptide_repeat 766 791
IPR002885 Pentatricopeptide_repeat 159 181
No external refs found!