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  5. Nbi_g16515

Nbi_g16515


Description : not classified & original description: none


Gene families : OG0000526 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g16515
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00257810 evm_27.TU.AmTr_v1... Remorin OS=Solanum tuberosum 0.02 OrthoFinder output from all 47 species
AT3G48940 No alias Remorin family protein 0.03 OrthoFinder output from all 47 species
Adi_g014534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26272 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g50861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70234 No alias not classified & original description: none 0.21 OrthoFinder output from all 47 species
Azfi_s0088.g042528 No alias not classified & original description: CDS=376-963 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048972 No alias not classified & original description: CDS=564-1205 0.04 OrthoFinder output from all 47 species
Azfi_s0528.g075784 No alias not classified & original description: CDS=146-685 0.04 OrthoFinder output from all 47 species
Ceric.04G101900.1 Ceric.04G101900 not classified & original description: pacid=50631891... 0.03 OrthoFinder output from all 47 species
Ceric.06G045700.1 Ceric.06G045700 not classified & original description: pacid=50619672... 0.13 OrthoFinder output from all 47 species
Ceric.35G046700.1 Ceric.35G046700 not classified & original description: pacid=50581722... 0.03 OrthoFinder output from all 47 species
Dac_g15637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02391 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42996 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g48279 No alias not classified & original description: none 0.24 OrthoFinder output from all 47 species
GSVIVT01019785001 No alias Remorin OS=Solanum tuberosum 0.07 OrthoFinder output from all 47 species
LOC_Os03g02040.1 LOC_Os03g02040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g45070.1 LOC_Os04g45070 Remorin OS=Solanum tuberosum (sp|p93788|remo_soltu : 95.9) 0.02 OrthoFinder output from all 47 species
LOC_Os10g36000.1 LOC_Os10g36000 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g01012 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g08631 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g57392 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Len_g57393 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g02670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_6856247g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g00941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06649 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
Msp_g43674 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Msp_g43675 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Ore_g09048 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15851 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g06625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08904 No alias not classified & original description: none 0.18 OrthoFinder output from all 47 species
Ppi_g60948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005937 No alias not classified & original description: CDS=1-372 0.05 OrthoFinder output from all 47 species
Sam_g20100 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48237 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g08097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38180 No alias not classified & original description: none 0.17 OrthoFinder output from all 47 species
Spa_g47427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015240_P001 Zm00001e015240 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR005516 Remorin_C 113 218
No external refs found!