Nbi_g17372


Description : LRR-domain extensin & original description: none


Gene families : OG0000448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000448_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g17372

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00242570 evm_27.TU.AmTr_v1... Pollen-specific leucine-rich repeat extensin-like... 0.02 OrthoFinder output from all 47 species
AMTR_s00051p00142580 evm_27.TU.AmTr_v1... Uncharacterized protein At4g06744 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G49490 No alias Leucine-rich repeat (LRR) family protein 0.02 OrthoFinder output from all 47 species
Ala_g35632 No alias LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13705 No alias LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G025000.1 Ceric.32G025000 LRR-domain extensin & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g32918 No alias LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g41120.1 LOC_Os01g41120 LRR-domain extensin 0.02 OrthoFinder output from all 47 species
Len_g05367 LRX2 LRR-domain extensin & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041184_P001 Zm00001e041184 Uncharacterized protein At4g06744 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 48 80
IPR001611 Leu-rich_rpt 116 173
No external refs found!