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  5. Nbi_g19793

Nbi_g19793


Description : EC_3.2 glycosylase & original description: none


Gene families : OG0001022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001022_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g19793

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00246460 XYL4, ATBXL4,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 OrthoFinder output from all 47 species
AMTR_s00057p00049120 ATBXL2, BXL2,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00088730 XYL4, ATBXL4,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
AT5G49360 ATBXL1, BXL1 beta-xylosidase 1 0.03 OrthoFinder output from all 47 species
Adi_g092980 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27548 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g37060 XYL4, ATBXL4 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25839 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03832 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G017800.1 Ceric.31G017800 EC_3.2 glycosylase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g20398 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25402 XYL4, ATBXL4 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006776001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01009003001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01017658001 BXL3, BX3, XYL3,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os04g54810.1 XYL4, ATBXL4,... bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species
Len_g05441 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27870 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g36714 XYL4, ATBXL4 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43289 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo112087 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
Solyc04g072850.4.1 Solyc04g072850 bifunctional alpha-L-arabinofuranosidase and... 0.06 OrthoFinder output from all 47 species
Tin_g08893 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007432_P001 Zm00001e007432 bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species
Zm00001e037605_P001 ATBXL2, BXL2,... bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 404 640
IPR001764 Glyco_hydro_3_N 114 358
No external refs found!