Nbi_g20185 (ATTRB1, TRB1)

Aliases : ATTRB1, TRB1

Description : PRC2-recruiting factor (TRB) of PRC2 histone methylation complex & original description: none

Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g20185

Target	Alias	Description	ECC score	Gene Family Method
AT5G67580	ATTBP3, TRB2,...	Homeodomain-like/winged-helix DNA-binding family protein	0.03	OrthoFinder output from all 47 species
LOC_Os01g40670.1	ATTRB1, TRB1,...	PRC2-recruiting factor (TRB). transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Pnu_g01613	ATTRB1, TRB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	117	173
IPR001005	SANT/Myb	7	57

External Links

No external refs found!