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  5. Nbi_g20197

Nbi_g20197


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g20197
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.04 OrthoFinder output from all 47 species
Adi_g005281 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g035633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03193 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04175 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22911 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g14067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14332 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28020 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28803 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18513 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06600 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17155 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 301 324
IPR002885 Pentatricopeptide_repeat 505 528
IPR002885 Pentatricopeptide_repeat 405 426
IPR002885 Pentatricopeptide_repeat 124 170
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 328 374
IPR002885 Pentatricopeptide_repeat 225 272
No external refs found!