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  5. Nbi_g21989

Nbi_g21989


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g21989

Target Alias Description ECC score Gene Family Method Actions
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from all 47 species
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G05240 MEF19 mitochondrial editing factor 19 0.04 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089158 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17771 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g36051 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06727 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27512 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09026 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02614 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04618 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g19946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28410 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02331.t1 Aspi01Gene02331 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14795.t1 CRR22, Aspi01Gene14795 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18019.t1 Aspi01Gene18019 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22967.t1 Aspi01Gene22967 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t1 Aspi01Gene28051 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene30842.t1 OTP84, Aspi01Gene30842 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42294.t1 Aspi01Gene42294 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034605 No alias ssDNA-binding protein *(OSB) & original description: CDS=21-2777 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.05 OrthoFinder output from all 47 species
Azfi_s0503.g073910 No alias not classified & original description: CDS=59-2179 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076393 No alias not classified & original description: CDS=1-927 0.05 OrthoFinder output from all 47 species
Azfi_s0731.g084096 No alias not classified & original description: CDS=1-3909 0.05 OrthoFinder output from all 47 species
Cba_g05272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15165 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g49149 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67895 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g75350 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.06G022800.1 Ceric.06G022800 not classified & original description: pacid=50620328... 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.06 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.12G025700.1 Ceric.12G025700 not classified & original description: pacid=50601618... 0.04 OrthoFinder output from all 47 species
Ceric.15G056400.1 Ceric.15G056400 not classified & original description: pacid=50639467... 0.04 OrthoFinder output from all 47 species
Ceric.21G054700.1 CRR22, Ceric.21G054700 not classified & original description: pacid=50603698... 0.05 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.30G007900.1 Ceric.30G007900 not classified & original description: pacid=50608292... 0.02 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g19103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06332 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07608 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10087 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17166 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g21154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43241 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g50140 OTP86 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g04879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17642 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g23517 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29669 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.06 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60250.1 LOC_Os01g60250 Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.04 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os06g40860.1 LOC_Os06g40860 Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
LOC_Os11g29360.1 OTP82, LOC_Os11g29360 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_653417g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_82569g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g31404 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23882 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g41038 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08638 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13020 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19712 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g40819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49579 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012842 CRR2 not classified & original description: CDS=114-1901 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022493 No alias not classified & original description: CDS=1-2544 0.03 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g04999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Smo82024 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
Solyc06g009500.1.1 Solyc06g009500 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Spa_g06014 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56147 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g20109 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.05 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR046848 E_motif 921 983
IPR002885 Pentatricopeptide_repeat 779 804
IPR002885 Pentatricopeptide_repeat 203 229
IPR002885 Pentatricopeptide_repeat 678 698
IPR002885 Pentatricopeptide_repeat 375 399
IPR032867 DYW_dom 1016 1107
IPR002885 Pentatricopeptide_repeat 602 649
IPR002885 Pentatricopeptide_repeat 704 750
IPR002885 Pentatricopeptide_repeat 299 348
IPR002885 Pentatricopeptide_repeat 502 548
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 805 852
No external refs found!