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  5. Nbi_g22160

Nbi_g22160 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g22160
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Adi_g019878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g030218 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21266 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07490 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08105 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30811 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16505 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33111 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g59712 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g61599 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67654 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene35048.t1 Aspi01Gene35048 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036252 No alias not classified & original description: CDS=1-1656 0.05 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.08 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.09 OrthoFinder output from all 47 species
Cba_g45352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G042700.1 Ceric.02G042700 not classified & original description: pacid=50584264... 0.04 OrthoFinder output from all 47 species
Dac_g07790 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25154 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g35673 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35762 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10759 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g17418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g28912 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
LOC_Os10g30760.1 LOC_Os10g30760 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Len_g03710 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g04633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12996 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g17561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18583 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18952 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25825 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g48142 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g03801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g04495 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g12162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14925 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17740 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g20568 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g21424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g22930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28020 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28222 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28474 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g33329 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g38614 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41094 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41336 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g42210 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g45473 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46092 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g47672 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04969 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10208 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g17487 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g18027 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g20492 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g39284 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g43122 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03573 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04611 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05273 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06848 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31283 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g34612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10760 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g18928 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21372 VAC1, ECB2, ATECB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g21662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23694 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26887 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g49412 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05462 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05610 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g09745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23118 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26623 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31074 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31218 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g31666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32394 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g34802 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g43909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 120 168
IPR002885 Pentatricopeptide_repeat 327 357
IPR002885 Pentatricopeptide_repeat 400 425
IPR002885 Pentatricopeptide_repeat 500 524
IPR002885 Pentatricopeptide_repeat 299 322
IPR002885 Pentatricopeptide_repeat 198 220
IPR046848 E_motif 543 605
IPR002885 Pentatricopeptide_repeat 225 272
No external refs found!