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  5. Nbi_g22452

Nbi_g22452


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g22452

Target Alias Description ECC score Gene Family Method Actions
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05719 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57762 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66850.t1 Aspi01Gene66850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.03 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.03 OrthoFinder output from all 47 species
Cba_g05760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07718 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g10890 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g19896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29926 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G062800.1 Ceric.06G062800 not classified & original description: pacid=50620833... 0.03 OrthoFinder output from all 47 species
Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.02 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.02 OrthoFinder output from all 47 species
Dac_g15344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22169 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g28570.1 LOC_Os01g28570 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g02881 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18068 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18567 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24715 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g18730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08380 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43020 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g61389 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.01 OrthoFinder output from all 47 species
Ppi_g06990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55770 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008817 CRR22 not classified & original description: CDS=1-2019 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019270 No alias not classified & original description: CDS=1-1617 0.05 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g096680.1.1 REME1, Solyc12g096680 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Spa_g12338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14608 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23700 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55598 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08346 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10198 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10691 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19594 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30046 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e022253_P001 Zm00001e022253 Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 200 247
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 402 449
IPR002885 Pentatricopeptide_repeat 604 651
IPR002885 Pentatricopeptide_repeat 301 345
IPR002885 Pentatricopeptide_repeat 672 702
IPR002885 Pentatricopeptide_repeat 578 603
IPR002885 Pentatricopeptide_repeat 143 166
IPR002885 Pentatricopeptide_repeat 374 400
No external refs found!