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  5. Nbi_g23435

Nbi_g23435 (CHR01, CHR1, CHA1,...)


Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : chromatin remodeling factor *(DDM1) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g23435
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT4G31900 PKR2 chromatin remodeling factor, putative 0.02 OrthoFinder output from all 47 species
Ala_g22712 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12795 CHR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09627 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50287.t1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12790 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.21G081900.1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.01 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Dac_g05131 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29228 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_102992g0020 CHR11 Probable chromatin-remodeling complex ATPase chain... 0.02 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Mp3g15030.1 CHR17 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Ppi_g12699 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g29413 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51134 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31900 CHR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g37141 CHR17 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 572 685
IPR000330 SNF2_N 252 549
No external refs found!