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  5. Nbi_g24808

Nbi_g24808


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g24808

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00115170 CRR21 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g014376 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16422 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g23793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25466 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g31145 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36518 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g38464 CRR2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g06402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33154 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47260 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g55318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18162 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04308.t1 Aspi01Gene04308 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05366.t1 VAC1, ECB2,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene14074.t1 CRR22, Aspi01Gene14074 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14535.t1 EMB2758, Aspi01Gene14535 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene32959.t1 Aspi01Gene32959 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene33411.t1 Aspi01Gene33411 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene35154.t1 Aspi01Gene35154 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene39631.t1 CRR2, Aspi01Gene39631 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43499.t1 REME1, Aspi01Gene43499 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48553.t1 Aspi01Gene48553 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52031.t1 Aspi01Gene52031 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene60948.t1 OTP84, Aspi01Gene60948 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001303 No alias not classified & original description: CDS=1-2292 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008403 EMB2758 not classified & original description: CDS=1-1560 0.01 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.14 OrthoFinder output from all 47 species
Azfi_s0004.g008760 No alias not classified & original description: CDS=1-2934 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010531 CRR2 not classified & original description: CDS=1-1098 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011342 No alias not classified & original description: CDS=1-1953 0.01 OrthoFinder output from all 47 species
Azfi_s0008.g011443 No alias not classified & original description: CDS=1-2145 0.04 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.01 OrthoFinder output from all 47 species
Azfi_s0010.g012298 No alias not classified & original description: CDS=1-3033 0.02 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.04 OrthoFinder output from all 47 species
Azfi_s0090.g042774 No alias not classified & original description: CDS=1-2433 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054263 No alias not classified & original description: CDS=137-2560 0.03 OrthoFinder output from all 47 species
Azfi_s0391.g067739 No alias not classified & original description: CDS=1-1755 0.04 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.03 OrthoFinder output from all 47 species
Ceric.06G022800.1 Ceric.06G022800 not classified & original description: pacid=50620328... 0.02 OrthoFinder output from all 47 species
Ceric.21G046100.1 Ceric.21G046100 not classified & original description: pacid=50602747... 0.03 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.01 OrthoFinder output from all 47 species
Dac_g04715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32949 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15570 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19712 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g21509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22180 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g22631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g29241 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g36369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g04685 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g08837 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18045 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25604 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g29928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g45824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54471 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54971 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g54973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g58985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g20148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13478 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g16883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40180 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g40942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07543 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g18773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g37318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06420 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18964 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04310 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g10306 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g12249 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g13403 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g32476 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63485 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g63820 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g03133 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03722 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g03847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05784 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g22238 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g31149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33170 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g43666 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g53186 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g56244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004036 OTP84 not classified & original description: CDS=1-1773 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005639 No alias CDP-diacylglycerol phosphatidylserine synthase &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008680 No alias not classified & original description: CDS=1-2187 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014697 OTP86 not classified & original description: CDS=1-2199 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016059 No alias not classified & original description: CDS=25-3486 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017928 No alias not classified & original description: CDS=112-2919 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019309 No alias not classified & original description: CDS=1-1605 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019330 No alias not classified & original description: CDS=1-2295 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022672 No alias not classified & original description: CDS=1-3558 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023175 No alias not classified & original description: CDS=1-2640 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023739 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025568 No alias not classified & original description: CDS=1-2793 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026911 REME1 not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Sam_g12066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12390 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Smo94907 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.01 OrthoFinder output from all 47 species
Spa_g02636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20079 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g20461 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50618 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g26878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 812 860
IPR002885 Pentatricopeptide_repeat 510 556
IPR002885 Pentatricopeptide_repeat 711 758
IPR002885 Pentatricopeptide_repeat 610 657
IPR032867 DYW_dom 1024 1113
IPR002885 Pentatricopeptide_repeat 115 138
IPR002885 Pentatricopeptide_repeat 412 440
IPR002885 Pentatricopeptide_repeat 686 706
IPR002885 Pentatricopeptide_repeat 483 505
IPR002885 Pentatricopeptide_repeat 786 807
IPR002885 Pentatricopeptide_repeat 210 239
No external refs found!