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  5. Nbi_g25428

Nbi_g25428


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g25428
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
AT1G77170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004440 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036683 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g051856 RARE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101155 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107292 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26204 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025464 No alias not classified & original description: CDS=1-2154 0.03 OrthoFinder output from all 47 species
Cba_g67033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G054200.1 Ceric.02G054200 not classified & original description: pacid=50585961... 0.04 OrthoFinder output from all 47 species
Ceric.04G072400.1 Ceric.04G072400 not classified & original description: pacid=50630959... 0.03 OrthoFinder output from all 47 species
Ceric.07G078100.1 OTP84, Ceric.07G078100 not classified & original description: pacid=50626860... 0.02 OrthoFinder output from all 47 species
Ceric.10G028200.1 Ceric.10G028200 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.12G018600.1 Ceric.12G018600 not classified & original description: pacid=50602205... 0.05 OrthoFinder output from all 47 species
Ceric.12G097500.1 Ceric.12G097500 not classified & original description: pacid=50601961... 0.03 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.05 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.02 OrthoFinder output from all 47 species
Ceric.1Z028800.1 Ceric.1Z028800 not classified & original description: pacid=50582143... 0.03 OrthoFinder output from all 47 species
Ceric.21G029400.1 Ceric.21G029400 not classified & original description: pacid=50602793... 0.04 OrthoFinder output from all 47 species
Ceric.23G048800.1 Ceric.23G048800 not classified & original description: pacid=50611258... 0.03 OrthoFinder output from all 47 species
Ceric.24G003700.1 Ceric.24G003700 not classified & original description: pacid=50629583... 0.03 OrthoFinder output from all 47 species
Ceric.26G053700.1 Ceric.26G053700 not classified & original description: pacid=50599734... 0.03 OrthoFinder output from all 47 species
Ceric.28G015100.1 Ceric.28G015100 not classified & original description: pacid=50570923... 0.02 OrthoFinder output from all 47 species
Ceric.30G032300.1 Ceric.30G032300 not classified & original description: pacid=50608635... 0.03 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.03 OrthoFinder output from all 47 species
Ceric.35G003800.1 Ceric.35G003800 not classified & original description: pacid=50581275... 0.03 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16094 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25739 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42048 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50249 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05254 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54667 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38509 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45771 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63648 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05273 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50214 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Spa_g08133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g25072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26703 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56707 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13649 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 677 729
IPR002885 Pentatricopeptide_repeat 260 287
IPR002885 Pentatricopeptide_repeat 433 456
IPR002885 Pentatricopeptide_repeat 332 357
IPR002885 Pentatricopeptide_repeat 358 404
IPR002885 Pentatricopeptide_repeat 158 205
IPR002885 Pentatricopeptide_repeat 458 505
IPR002885 Pentatricopeptide_repeat 559 606
No external refs found!