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  5. Nbi_g26497

Nbi_g26497 (NRPD1A, POL IVA,...)


Aliases : NRPD1A, POL IVA, NRPD1, SMD2, SDE4

Description : component *(NRPE1) of RNA polymerase V complex & original description: none


Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g26497

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013491001 DRD3, ATNRPD1B,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 722 794
IPR007066 RNA_pol_Rpb1_3 514 658
IPR000722 RNA_pol_asu 356 509
IPR007081 RNA_pol_Rpb1_5 843 1241
IPR007080 RNA_pol_Rpb1_1 24 255
No external refs found!