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  5. Nbi_g27541

Nbi_g27541


Description : not classified & original description: none


Gene families : OG0001815 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001815_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27541
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00053270 FLA20,... No description available 0.02 OrthoFinder output from all 47 species
Aspi01Gene24304.t1 Aspi01Gene24304 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G009800.1 Ceric.02G009800 not classified & original description: pacid=50584637... 0.03 OrthoFinder output from all 47 species
Ceric.11G050800.1 Ceric.11G050800 not classified & original description: pacid=50596503... 0.04 OrthoFinder output from all 47 species
Ceric.23G000500.1 Ceric.23G000500 not classified & original description: pacid=50611562... 0.03 OrthoFinder output from all 47 species
Ceric.27G033900.1 Ceric.27G033900 not classified & original description: pacid=50606120... 0.03 OrthoFinder output from all 47 species
Ceric.34G054200.1 Ceric.34G054200 not classified & original description: pacid=50623109... 0.03 OrthoFinder output from all 47 species
Dcu_g42902 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g42961 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43111 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50627 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g56881 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g44261 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04573 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47560 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g49061 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44448 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g46034 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000782 FAS1_domain 395 504
No external refs found!