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  5. Nbi_g27959

Nbi_g27959


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27959

Target Alias Description ECC score Gene Family Method Actions
Adi_g003861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004271 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g007782 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066608 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32674 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g27203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33246 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05266 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36669 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18162 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04185.t1 Aspi01Gene04185 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30154.t1 Aspi01Gene30154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30517.t1 CRR22, Aspi01Gene30517 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35394.t1 Aspi01Gene35394 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58644.t1 Aspi01Gene58644 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65890.t1 Aspi01Gene65890 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.02 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.02 OrthoFinder output from all 47 species
Cba_g06940 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11842 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34742 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g43653 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G007000.1 Ceric.10G007000 not classified & original description: pacid=50613077... 0.03 OrthoFinder output from all 47 species
Ceric.12G016200.1 Ceric.12G016200 not classified & original description: pacid=50601153... 0.02 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.03 OrthoFinder output from all 47 species
Ceric.25G031300.1 Ceric.25G031300 not classified & original description: pacid=50593567... 0.03 OrthoFinder output from all 47 species
Ceric.32G014100.1 Ceric.32G014100 not classified & original description: pacid=50597391... 0.03 OrthoFinder output from all 47 species
Ceric.34G009900.1 Ceric.34G009900 not classified & original description: pacid=50623876... 0.03 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.03 OrthoFinder output from all 47 species
Dac_g18747 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032950001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g38580.1 EMB2261, LOC_Os03g38580 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
LOC_Os04g14450.1 LOC_Os04g14450 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12108 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36261 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37426 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_35442g0010 No alias RNA editing factor (SLO2) 0.03 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_71104g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Msp_g08181 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31919 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g40594 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48060 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16027 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g44738 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22460 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11736 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g56915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60920 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02439 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18373 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30301 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07547 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56302 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004386 No alias not classified & original description: CDS=1-2367 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0134.g022300 CRR22 not classified & original description: CDS=1-1791 0.03 OrthoFinder output from all 47 species
Sam_g07175 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo115590 REME1 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Spa_g00965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23794 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 504 528
IPR002885 Pentatricopeptide_repeat 327 375
IPR002885 Pentatricopeptide_repeat 225 272
IPR002885 Pentatricopeptide_repeat 124 170
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 430 478
IPR046848 E_motif 549 605
No external refs found!