Nbi_g28126


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g28126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.06 OrthoFinder output from all 47 species
Als_g09043 DOT4 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g29010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36669 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12813 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g18162 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21423 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g33113 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34546 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g35128 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67388 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g75248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G103800.1 Ceric.04G103800 not classified & original description: pacid=50630749... 0.03 OrthoFinder output from all 47 species
Ceric.06G079700.1 CRR22, Ceric.06G079700 not classified & original description: pacid=50619673... 0.07 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.03 OrthoFinder output from all 47 species
Ceric.08G020400.1 OTP84, Ceric.08G020400 not classified & original description: pacid=50638334... 0.03 OrthoFinder output from all 47 species
Ceric.11G018800.1 Ceric.11G018800 not classified & original description: pacid=50595512... 0.04 OrthoFinder output from all 47 species
Ceric.18G000200.1 Ceric.18G000200 not classified & original description: pacid=50622455... 0.03 OrthoFinder output from all 47 species
Ceric.18G023200.1 Ceric.18G023200 not classified & original description: pacid=50622130... 0.04 OrthoFinder output from all 47 species
Ceric.18G033700.1 OTP86, Ceric.18G033700 not classified & original description: pacid=50622086... 0.03 OrthoFinder output from all 47 species
Ceric.30G017300.1 Ceric.30G017300 not classified & original description: pacid=50608904... 0.04 OrthoFinder output from all 47 species
Ceric.36G022000.1 Ceric.36G022000 not classified & original description: pacid=50568812... 0.03 OrthoFinder output from all 47 species
Dac_g05475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g31448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07750 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08252 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08785 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45948 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33759 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g13001 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28020 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43134 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07924 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g39379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015571 No alias not classified & original description: CDS=1-1581 0.04 OrthoFinder output from all 47 species
Sam_g24764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
Smo107947 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Tin_g17634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23004 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26638 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26902 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30245 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30432 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38363 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 76 122
IPR002885 Pentatricopeptide_repeat 177 225
IPR002885 Pentatricopeptide_repeat 254 277
IPR002885 Pentatricopeptide_repeat 50 75
IPR002885 Pentatricopeptide_repeat 152 176
No external refs found!