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  5. Nbi_g28976

Nbi_g28976


Description : AP2-type transcription factor *(WRI/AIL) & original description: none


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g28976
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00086450 ADAP,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Ala_g05510 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24152.t1 PLT2, Aspi01Gene24152 AP2-type transcription factor *(WRI/AIL) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g47713 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01016352001 RAP2.7, TOE1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Gb_33988 AP2, FLO2, FL1 transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
LOC_Os05g03040.1 RAP2.7, TOE1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species
LOC_Os11g03540.1 WRI1, ATWRI1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Len_g45546 WRI1, ATWRI1, ASML1, WRI AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Ore_g04250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29244 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Pir_g06192 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.06 OrthoFinder output from all 47 species
Pir_g17484 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.03 OrthoFinder output from all 47 species
Solyc04g049800.3.1 RAP2.7, TOE1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Solyc06g075510.4.1 RAP2.7, TOE1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
Solyc09g007260.4.1 RAP2.7, TOE1,... transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
Solyc11g072600.3.1 RAP2.7, TOE1,... transcription factor (AP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 162 214
No external refs found!