Aliases : LHCB2.3, LHCB2, LHCB2.4
Description : component *(LHCb1/2/3) of LHC-II complex & original description: none
Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00045p00069900 | LHCB1.5, LHB1B2,... | Photosynthesis.photophosphorylation.photosystem... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G29910 | CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | 0.02 | OrthoFinder output from all 47 species | |
| AT1G29930 | LHCB1.3, CAB140,... | chlorophyll A/B binding protein 1 | 0.02 | OrthoFinder output from all 47 species | |
| AT2G05100 | LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
| AT2G34420 | LHCB1.5, LHB1B2 | photosystem II light harvesting complex gene B1B2 | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g13791 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g13734 | LHCB2.2, LHCB2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cre06.g284250 | LHCB2.2, LHCB2 | Photosynthesis.photophosphorylation.photosystem... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g19837 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g33981 | LHCB2.3, LHCB2, LHCB2.4 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g29238 | LHCB3*1, LHCB3 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g43000 | LHCB5 | component *(LHCb5) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g48076 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020858001 | LHCB1.5, LHB1B2 | Chlorophyll a-b binding protein 40, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01021405001 | LHCB1.5, LHB1B2 | Chlorophyll a-b binding protein 21, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01030053001 | LHCB2.3, LHCB2, LHCB2.4 | Chlorophyll a-b binding protein 151, chloroplastic... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g41710.1 | LHCB1.5, LHB1B2,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g39610.1 | LHCB2.2, LHCB2,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g37550.1 | LHCB3*1, LHCB3,... | component LHCb1/2/3 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g17740.1 | LHCB1.5, LHB1B2,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os11g13890.1 | LHCB5, LOC_Os11g13890 | component LHCb5 of LHC-II complex | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g29620.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g10900.1 | LHCB5 | component LHCb5 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g05880.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g06790.1 | LHCB2.3, LHCB2, LHCB2.4 | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g08940.1 | LHCB3*1, LHCB3 | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g02726 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g47176 | LHCB1.5, LHB1B2 | component *(LHCb1/2/3) of LHC-II complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c18_8100V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c21_3950V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c26_6740V3.1 | LHCB2.3, LHCB2,... | photosystem II light harvesting complex gene 2.1 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g063600.3.1 | LHCB3*1, LHCB3,... | component LHCb1/2/3 of LHC-II complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034922_P001 | LHCB1.5, LHB1B2,... | Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 97 | 263 |
| No external refs found! |
