Nbi_g29347 (ASK2, SKP1B)

Aliases : ASK2, SKP1B

Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes & original description: none

Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g29347
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AT3G21840	ASK7, SK7	SKP1-like 7	0.02	OrthoFinder output from all 47 species
AT3G21850	SK9, ASK9	SKP1-like 9	0.03	OrthoFinder output from all 47 species
Ceric.20G070900.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Ceric.20G071200.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ceric.20G071800.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
Ceric.20G072200.1	ASK2, SKP1B,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Ceric.20G072300.1	ASK2, SKP1B,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Dac_g39230	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
GSVIVT01024014001	ASK1, ATSKP1,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
LOC_Os07g05150.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
LOC_Os07g05160.1	ASK4, SK4, LOC_Os07g05160	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
LOC_Os07g05180.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
LOC_Os07g43180.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
LOC_Os07g43270.1	ASK1, ATSKP1,...	target protein binding component SKP1/ASK1 of...	0.04	OrthoFinder output from all 47 species
LOC_Os09g10270.1	ASK4, SK4, LOC_Os09g10270	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
Mp2g05290.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ppi_g09622	ASK2, SKP1B	ASK-type linker component of SCF E3 ubiquitin ligase...	0.1	OrthoFinder output from all 47 species
Smo98727	ASK1, ATSKP1,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	29	93
IPR016072	Skp1_comp_dimer	170	217

External Links

No external refs found!

Nbi_g29347 (ASK2, SKP1B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation