Nbi_g30270 (PGP11)

Aliases : PGP11

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g30270

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00254310	ABCB19,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Ala_g17861	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06805	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.35G032800.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.38G058800.1	PGP2, Ceric.38G058800	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_07563	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Lfl_g40249	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g005860.4.1	PGP11, Solyc03g005860	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Tin_g31718	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	393	541
IPR003439	ABC_transporter-like_ATP-bd	1047	1196
IPR011527	ABC1_TM_dom	55	323
IPR011527	ABC1_TM_dom	710	978

External Links

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Nbi_g30270 (PGP11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation