Nbi_g30403 (SHP2, AGL5)


Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g30403
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AT5G51860 No alias K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
Aop_g10673 AGL16 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene15816.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Ore_g04915 AGL61, DIA MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g25658 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 251 335
IPR002100 TF_MADSbox 175 222
No external refs found!