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  5. Nbi_g32187

Nbi_g32187


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g32187
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Ala_g04857 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g37258 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g06487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04634 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g16003 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17429 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23992 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g37237 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67579 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55840.t1 Aspi01Gene55840 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13662 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g05769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08616 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g16545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33116 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38677 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39483 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43978 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g05762 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g49909 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01033906001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Len_g03351 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16104 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g03543 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g14691 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23154 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g45777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45873 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g20201 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22972 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42021 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ppi_g31376 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g43237 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16744 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g51436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo91949 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.05 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33712 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g54818 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g57153 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 660 682
IPR002885 Pentatricopeptide_repeat 455 475
IPR002885 Pentatricopeptide_repeat 557 581
IPR002885 Pentatricopeptide_repeat 150 172
IPR002885 Pentatricopeptide_repeat 178 207
IPR002885 Pentatricopeptide_repeat 354 376
IPR002885 Pentatricopeptide_repeat 483 511
IPR002885 Pentatricopeptide_repeat 85 107
IPR002885 Pentatricopeptide_repeat 583 630
IPR002885 Pentatricopeptide_repeat 278 324
IPR002885 Pentatricopeptide_repeat 380 427
No external refs found!