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  5. Nbi_g32359

Nbi_g32359


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g32359
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00156450 REME1,... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g069271 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07955 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23950 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G059000.1 Ceric.04G059000 not classified & original description: pacid=50632212... 0.04 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.04 OrthoFinder output from all 47 species
Ceric.09G087400.1 Ceric.09G087400 not classified & original description: pacid=50586781... 0.05 OrthoFinder output from all 47 species
Ceric.16G044900.1 Ceric.16G044900 not classified & original description: pacid=50590190... 0.04 OrthoFinder output from all 47 species
Ceric.20G048700.1 CRR22, Ceric.20G048700 not classified & original description: pacid=50567179... 0.04 OrthoFinder output from all 47 species
Ceric.28G029300.1 Ceric.28G029300 not classified & original description: pacid=50569762... 0.05 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.04 OrthoFinder output from all 47 species
Dcu_g08166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40775 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g03965 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Len_g04745 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_107723g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_124907g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
MA_480955g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Msp_g09671 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28801 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g31578 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g05347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43620 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05328 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008527 OTP84 borate transporter *(BOR) & original description: CDS=118-8541 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013908 No alias not classified & original description: CDS=1-1767 0.02 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15017 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 939 986
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 736 782
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 531 579
IPR002885 Pentatricopeptide_repeat 634 681
IPR002885 Pentatricopeptide_repeat 225 263
IPR002885 Pentatricopeptide_repeat 404 427
IPR002885 Pentatricopeptide_repeat 840 869
IPR002885 Pentatricopeptide_repeat 303 326
IPR002885 Pentatricopeptide_repeat 433 462
IPR002885 Pentatricopeptide_repeat 328 375
No external refs found!