Nbi_g38538


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g38538

Target Alias Description ECC score Gene Family Method Actions
AT2G36980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004703 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g025357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g071893 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20047 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g22000 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05283 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g14569 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g32345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05937 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12045 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02659 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g16095 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g16780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g16783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g33010 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g67674 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g70598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70728 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene54997.t1 CRK8, Aspi01Gene54997 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000814 CRR22 not classified & original description: CDS=1-2214 0.07 OrthoFinder output from all 47 species
Azfi_s0005.g009198 No alias not classified & original description: CDS=1-3051 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.04 OrthoFinder output from all 47 species
Azfi_s0144.g051566 No alias not classified & original description: CDS=1-1788 0.05 OrthoFinder output from all 47 species
Azfi_s0236.g059504 No alias not classified & original description: CDS=1-2307 0.04 OrthoFinder output from all 47 species
Azfi_s0251.g060294 No alias not classified & original description: CDS=1-879 0.08 OrthoFinder output from all 47 species
Azfi_s0601.g078897 No alias not classified & original description: CDS=1-2646 0.05 OrthoFinder output from all 47 species
Cba_g04727 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07225 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g15829 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20154 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20557 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g26795 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g35085 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g67652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g72789 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.04G034400.1 Ceric.04G034400 not classified & original description: pacid=50632280... 0.03 OrthoFinder output from all 47 species
Ceric.15G021100.1 Ceric.15G021100 not classified & original description: pacid=50639951... 0.04 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.07 OrthoFinder output from all 47 species
Dac_g13270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g19560 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g29411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30446 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35851 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g05769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07044 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g04001 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28407 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28884 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g48257 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20585 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g23960.1 LOC_Os05g23960 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
LOC_Os06g08650.1 LOC_Os06g08650 Pentatricopeptide repeat-containing protein At2g03380,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g39090.1 LOC_Os07g39090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g04230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05167 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05368 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12939 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18855 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g19013 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g33765 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44140 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44860 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56529 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07835 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08907 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11306 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38587 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
MA_121512g0010 No alias ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Msp_g06837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g07585 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g12623 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17498 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17576 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g20741 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g23186 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28016 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28222 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g28798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g32055 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g34481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41385 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44153 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06304 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g15699 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21730 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g24066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24651 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27707 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g41058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09916 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g37271 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37891 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06170 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63807 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03573 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05340 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31283 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g39076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g42008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48708 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53018 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53554 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g53912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55534 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g58173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g098480.3.1 Solyc01g098480 Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species
Solyc03g119120.3.1 Solyc03g119120 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc06g053850.4.1 Solyc06g053850 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc09g065710.1.1 OTP86, Solyc09g065710 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species
Spa_g16587 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30407 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33278 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g45637 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19174 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19530 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22636 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26879 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g27411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g41605 OTP81 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g44203 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 254 276
IPR002885 Pentatricopeptide_repeat 280 326
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 75 122
No external refs found!