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  5. Nbi_g38705

Nbi_g38705


Description : histone demethylase *(KDM5) & original description: none


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g38705

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00062020 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00144240 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g012015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g042525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055868 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g107372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g20696 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62631 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13634 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36846 PKDM7D histone demethylase *(PKDM7) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28386.t1 Aspi01Gene28386 histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.04 OrthoFinder output from all 47 species
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434186g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_91656g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_97089g0010 PKDM7D Putative lysine-specific demethylase JMJ16... 0.03 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g29562 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53449 PKDM7D not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 263 379
IPR019787 Znf_PHD-finger 1584 1644
IPR019787 Znf_PHD-finger 91 137
IPR013637 Lys_sp_deMease-like_dom 1085 1277
IPR013637 Lys_sp_deMease-like_dom 737 848
IPR013637 Lys_sp_deMease-like_dom 574 803
IPR013637 Lys_sp_deMease-like_dom 809 1050
IPR013637 Lys_sp_deMease-like_dom 1394 1580
IPR004198 Znf_C5HC2 473 525
No external refs found!