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  5. Nbi_g39701

Nbi_g39701


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g39701

Target Alias Description ECC score Gene Family Method Actions
Adi_g014239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034232 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g069246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08612.t1 Aspi01Gene08612 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04726 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07735 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13786 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29632 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34536 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.31G066800.1 Ceric.31G066800 not classified & original description: pacid=50573808... 0.03 OrthoFinder output from all 47 species
Ceric.34G000500.1 Ceric.34G000500 not classified & original description: pacid=50623432... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g18747 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08951 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
LOC_Os04g38980.1 LOC_Os04g38980 Pentatricopeptide repeat-containing protein At4g39952,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g45850.1 LOC_Os05g45850 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Len_g54667 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38362 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Msp_g07777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23526 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32012 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g65306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06358 MEF19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18927 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g21699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63671 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002155 CRR22 not classified & original description: CDS=84-2588 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004867 No alias not classified & original description: CDS=342-1943 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011851 OTP84 not classified & original description: CDS=1-2175 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025598 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06686 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20089 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37419 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 492 514
IPR002885 Pentatricopeptide_repeat 697 718
IPR002885 Pentatricopeptide_repeat 113 136
IPR002885 Pentatricopeptide_repeat 799 819
IPR002885 Pentatricopeptide_repeat 212 259
IPR002885 Pentatricopeptide_repeat 620 666
IPR002885 Pentatricopeptide_repeat 722 768
IPR002885 Pentatricopeptide_repeat 519 564
IPR002885 Pentatricopeptide_repeat 314 361
IPR002885 Pentatricopeptide_repeat 416 463
No external refs found!