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  5. Nbi_g41060

Nbi_g41060


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g41060
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g099164 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31169 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023799 No alias not classified & original description: CDS=1-1911 0.05 OrthoFinder output from all 47 species
Cba_g26054 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g65097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75109 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G071100.1 Ceric.02G071100 not classified & original description: pacid=50585515... 0.04 OrthoFinder output from all 47 species
Ceric.03G031800.1 Ceric.03G031800 not classified & original description: pacid=50573080... 0.04 OrthoFinder output from all 47 species
Ceric.04G059000.1 Ceric.04G059000 not classified & original description: pacid=50632212... 0.04 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.05 OrthoFinder output from all 47 species
Ceric.13G052000.1 Ceric.13G052000 not classified & original description: pacid=50635571... 0.04 OrthoFinder output from all 47 species
Ceric.16G044900.1 Ceric.16G044900 not classified & original description: pacid=50590190... 0.05 OrthoFinder output from all 47 species
Ceric.1Z148400.1 Ceric.1Z148400 not classified & original description: pacid=50637111... 0.04 OrthoFinder output from all 47 species
Ceric.23G032000.1 Ceric.23G032000 not classified & original description: pacid=50611416... 0.05 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.06 OrthoFinder output from all 47 species
Ceric.34G057600.1 Ceric.34G057600 not classified & original description: pacid=50623573... 0.04 OrthoFinder output from all 47 species
Ceric.35G058500.1 Ceric.35G058500 not classified & original description: pacid=50581681... 0.04 OrthoFinder output from all 47 species
Dac_g05656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18761 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30156 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g31126 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35207 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g36371 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42858 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08605 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47902 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.04 OrthoFinder output from all 47 species
Gb_18462 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
LOC_Os01g46230.1 MEF1, LOC_Os01g46230 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g38610.1 LOC_Os08g38610 Pentatricopeptide repeat-containing protein At1g26900,... 0.03 OrthoFinder output from all 47 species
Len_g51192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57308 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g45102 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g48712 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g01992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g06424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29940 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14281 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g42473 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50396 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17467 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 15 61
IPR002885 Pentatricopeptide_repeat 620 667
IPR002885 Pentatricopeptide_repeat 318 365
IPR002885 Pentatricopeptide_repeat 217 263
IPR002885 Pentatricopeptide_repeat 90 111
IPR002885 Pentatricopeptide_repeat 292 315
IPR002885 Pentatricopeptide_repeat 191 214
IPR002885 Pentatricopeptide_repeat 421 450
IPR002885 Pentatricopeptide_repeat 118 148
IPR002885 Pentatricopeptide_repeat 522 552
IPR002885 Pentatricopeptide_repeat 393 414
IPR002885 Pentatricopeptide_repeat 494 519
IPR002885 Pentatricopeptide_repeat 688 719
No external refs found!