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  5. Nbi_g41761

Nbi_g41761 (AGL16)


Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g41761
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Als_g10888 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09207 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g10603 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22677 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13457 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05105 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58877 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02675 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09107 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57086 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18903 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Spa_g12474 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 185 267
IPR002100 TF_MADSbox 110 157
No external refs found!