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  5. Nbi_g43133

Nbi_g43133


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g43133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g041167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47653.t1 Aspi01Gene47653 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g05437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014264 No alias not classified & original description: CDS=1-1203 0.02 OrthoFinder output from all 47 species
Solyc04g077520.3.1 RBP1, ATRBP1,... RNA-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 175
IPR000504 RRM_dom 8 58
No external refs found!