Nbi_g44509


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g44509

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009423 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16840 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24134 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59589 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g67897 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69580.t1 Aspi01Gene69580 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000396 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015476 No alias not classified & original description: CDS=1-3885 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g024030 No alias not classified & original description: CDS=1-1224 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024956 No alias not classified & original description: CDS=109-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026628 No alias not classified & original description: CDS=1-2499 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033749 No alias not classified & original description: CDS=1-3141 0.03 OrthoFinder output from all 47 species
Azfi_s0072.g037007 No alias not classified & original description: CDS=105-2705 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.02 OrthoFinder output from all 47 species
Cba_g15277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30008 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G071100.1 Ceric.02G071100 not classified & original description: pacid=50585515... 0.03 OrthoFinder output from all 47 species
Ceric.04G010500.1 Ceric.04G010500 not classified & original description: pacid=50631555... 0.03 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.02 OrthoFinder output from all 47 species
Ceric.07G035900.1 Ceric.07G035900 not classified & original description: pacid=50625961... 0.03 OrthoFinder output from all 47 species
Ceric.07G041800.1 Ceric.07G041800 not classified & original description: pacid=50626255... 0.03 OrthoFinder output from all 47 species
Ceric.10G047400.1 OTP84, Ceric.10G047400 not classified & original description: pacid=50612794... 0.03 OrthoFinder output from all 47 species
Ceric.11G040900.1 Ceric.11G040900 not classified & original description: pacid=50596742... 0.03 OrthoFinder output from all 47 species
Ceric.14G013800.1 Ceric.14G013800 not classified & original description: pacid=50633719... 0.03 OrthoFinder output from all 47 species
Ceric.18G008700.1 Ceric.18G008700 not classified & original description: pacid=50621984... 0.03 OrthoFinder output from all 47 species
Ceric.18G013300.1 EMB2758, Ceric.18G013300 not classified & original description: pacid=50620993... 0.03 OrthoFinder output from all 47 species
Ceric.20G051600.1 Ceric.20G051600 not classified & original description: pacid=50567347... 0.03 OrthoFinder output from all 47 species
Ceric.22G068300.1 Ceric.22G068300 not classified & original description: pacid=50614812... 0.03 OrthoFinder output from all 47 species
Ceric.28G055900.1 Ceric.28G055900 not classified & original description: pacid=50569676... 0.03 OrthoFinder output from all 47 species
Ceric.29G055100.1 Ceric.29G055100 not classified & original description: pacid=50625141... 0.03 OrthoFinder output from all 47 species
Ceric.39G043600.1 Ceric.39G043600 not classified & original description: pacid=50582616... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g04265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18772 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38493 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03935 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48000 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028154001 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.02 OrthoFinder output from all 47 species
Len_g03238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03293 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04349 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26316 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32916 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g18639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g18814 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35189 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13489 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17052 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63028 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63597 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63629 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30304 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03921 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05208 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18881 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55201 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59328 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63607 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008413 No alias not classified & original description: CDS=1-1578 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026116 No alias not classified & original description: CDS=1-2901 0.03 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Spa_g06501 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23607 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23972 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24976 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25057 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50886 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12958 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 254 277
IPR002885 Pentatricopeptide_repeat 50 72
IPR002885 Pentatricopeptide_repeat 385 414
IPR002885 Pentatricopeptide_repeat 562 582
IPR002885 Pentatricopeptide_repeat 355 377
IPR002885 Pentatricopeptide_repeat 486 533
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 589 634
IPR002885 Pentatricopeptide_repeat 279 326
No external refs found!