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  5. Len_g01102

Len_g01102


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g01102
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Aop_g05095 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12201 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14817.t1 Aspi01Gene14817 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19777.t1 Aspi01Gene19777 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024585 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-897 0.04 OrthoFinder output from all 47 species
Ceric.18G045500.1 Ceric.18G045500 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.19G013000.1 Ceric.19G013000 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.20G005100.1 Ceric.20G005100 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.14 OrthoFinder output from all 47 species
GSVIVT01009643001 No alias No description available 0.02 OrthoFinder output from all 47 species
Nbi_g12014 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.13 OrthoFinder output from all 47 species
Nbi_g13792 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.17 OrthoFinder output from all 47 species
Ppi_g62388 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g020008 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-681 0.03 OrthoFinder output from all 47 species
Solyc01g109340.4.1 Solyc01g109340 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g10565 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g11747 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028986_P001 Zm00001e028986 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 63 102
No external refs found!