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  5. Len_g01683

Len_g01683 (NCLPP4, CLPP4)


Aliases : NCLPP4, CLPP4

Description : proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0000552 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g01683
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT1G02560 NCLPP1, CLPP5, NCLPP5 nuclear encoded CLP protease 5 0.02 OrthoFinder output from all 47 species
AT5G45390 NCLPP4, CLPP4 CLP protease P4 0.03 OrthoFinder output from all 47 species
Adi_g022234 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aev_g00900 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Ala_g05972 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ala_g06348 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Als_g02394 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aop_g09541 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ceric.39G020800.1 NCLPP4, CLPP4,... proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Dcu_g03766 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dde_g52147 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ehy_g00664 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.06 OrthoFinder output from all 47 species
Ehy_g00970 CLPP3, NCLPP3 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
GSVIVT01028130001 NCLPP1, CLPP5, NCLPP5 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
LOC_Os01g32350.1 CLPP3, NCLPP3,... proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species
LOC_Os10g43050.1 NCLPP4, CLPP4,... proteolytic core component ClpP1/3-6 of chloroplast... 0.03 OrthoFinder output from all 47 species
Len_g28306 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
MA_159916g0010 CLPP3, NCLPP3 proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species
MA_164820g0010 CLPP3, NCLPP3 proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species
Mp1g12460.1 NCLPP4, CLPP4 proteolytic core component ClpP1/3-6 of chloroplast... 0.06 OrthoFinder output from all 47 species
Mp2g19280.1 NCLPP1, CLPP5, NCLPP5 proteolytic core component ClpP1/3-6 of chloroplast... 0.04 OrthoFinder output from all 47 species
Mp3g07790.1 CLPP3, NCLPP3 proteolytic core component ClpP1/3-6 of chloroplast... 0.03 OrthoFinder output from all 47 species
Ore_g08101 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pir_g14966 CLPP2, NCLPP7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c24_11660V3.1 NCLPP1, CLPP5,... nuclear encoded CLP protease 5 0.02 OrthoFinder output from all 47 species
Ppi_g00602 NCLPP1, CLPP5, NCLPP5 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ppi_g32919 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001045 NCLPP4, CLPP4 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Solyc01g100520.3.1 NCLPP1, CLPP5,... proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species
Zm00001e001449_P005 NCLPP1, CLPP5,... proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species
Zm00001e023057_P001 CLPP2, NCLPP7,... ATP-dependent Clp protease proteolytic subunit 2,... 0.02 OrthoFinder output from all 47 species
Zm00001e038326_P005 NCLPP1, CLPP5,... proteolytic core component ClpP1/3-6 of chloroplast... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 84 258
No external refs found!