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  5. Len_g02180

Len_g02180


Description : subgroup ERF-III transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g02180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00249140 evm_27.TU.AmTr_v1... Cell wall.cutin and suberin.biosynthesis... 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00140780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00148p00084540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AT1G53910 RAP2.12 related to AP2 12 0.03 OrthoFinder output from all 47 species
AT5G05410 DREB2A, DREB2 DRE-binding protein 2A 0.02 OrthoFinder output from all 47 species
AT5G13330 Rap2.6L related to AP2 6l 0.02 OrthoFinder output from all 47 species
AT5G25390 SHN2 Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G53290 CRF3 cytokinin response factor 3 0.02 OrthoFinder output from all 47 species
Aev_g16587 WIN1, SHN1 cutin and suberin biosynthesis transcription factor... 0.02 OrthoFinder output from all 47 species
Aev_g21810 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF19/20) &... 0.02 OrthoFinder output from all 47 species
Als_g57703 CRF3 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33297 CRF3 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37207 DREB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05675.t1 Aspi01Gene05675 subgroup ERF-III transcription factor & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene49734.t1 HRE2, Aspi01Gene49734 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0168.g054644 TINY2 subgroup ERF-III transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dac_g08898 DEAR1, CEJ1, ATERF#011 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g09321 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.05 OrthoFinder output from all 47 species
Dde_g27595 DEAR4, RAP2.10 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Ehy_g00460 No alias subgroup ERF-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22214 tny subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01013917001 ERF104 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01013923001 ERF104 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01013935001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01015037001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01031747001 RRTF1 Alpha-amylase type B isozyme OS=Hordeum vulgare 0.02 OrthoFinder output from all 47 species
LOC_Os01g73770.1 CBF4, DREB1D,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os02g45450.1 CBF4, DREB1D,... Dehydration-responsive element-binding protein 1G... 0.02 OrthoFinder output from all 47 species
LOC_Os02g51670.1 RAP2.4, LOC_Os02g51670 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g54050.1 LOC_Os02g54050 Ethylene-responsive transcription factor ERF018... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46440.1 ERF38, ATERF38,... transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os05g39590.3 LOC_Os05g39590 Dehydration-responsive element-binding protein 2D... 0.04 OrthoFinder output from all 47 species
LOC_Os05g41760.1 ATERF12, ERF12,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os08g36920.1 RRTF1, LOC_Os08g36920 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
MA_33689g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
MA_7960347g0010 TMO3, CRF2 transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Mp5g01050.1 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Mp5g11100.1 ATERF4, RAP2.5,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g22598 CRF3 subgroup ERF-VI transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38462 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ore_g21499 No alias cutin and suberin biosynthesis transcription factor... 0.03 OrthoFinder output from all 47 species
Ore_g44514 No alias cutin and suberin biosynthesis transcription factor... 0.04 OrthoFinder output from all 47 species
Pnu_g31928 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.05 OrthoFinder output from all 47 species
Pp3c10_17870V3.1 Pp3c10_17870 Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g11128 HRE2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006108 No alias not classified & original description: CDS=1-567 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014837 tny subgroup ERF-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g15417 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g16459 No alias subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g057080.1.1 Solyc01g057080 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc02g077360.1.1 Solyc02g077360 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc02g090800.1.1 RAP2.6, Solyc02g090800 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc03g093540.1.1 Solyc03g093540 transcription factor (ERF) 0.06 OrthoFinder output from all 47 species
Solyc03g093550.1.1 Solyc03g093550 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Solyc04g051360.3.1 ABR1, Solyc04g051360 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc05g052040.1.1 Solyc05g052040 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc06g035700.1.1 Solyc06g035700 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc06g082590.1.1 CRF4, Solyc06g082590 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc08g078190.2.1 ERF5, ATERF-5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Spa_g16486 RAP2.11 transcription factor *(ERN1) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g21730 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g23712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000611_P001 HRE1, Zm00001e000611 Ethylene-responsive transcription factor ERF073... 0.01 OrthoFinder output from all 47 species
Zm00001e014008_P002 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
Zm00001e023816_P001 Zm00001e023816 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e026989_P001 ERF110, Zm00001e026989 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e030585_P001 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
Zm00001e031783_P001 ERF110, Zm00001e031783 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e035837_P001 ERF72, EBP,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 34 84
No external refs found!