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  5. Len_g02647

Len_g02647 (RAB-A2C, ATRAB11A,...)


Aliases : RAB-A2C, ATRAB11A, RABA2c, ATRAB-A2C, ATRABA2C

Description : A-class RAB GTPase & original description: none


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g02647

Target Alias Description ECC score Gene Family Method Actions
AT1G05810 ARA-1, ATRABA5E,... RAB GTPase homolog A5E 0.04 OrthoFinder output from all 47 species
AT1G16920 ATRABA1B, RAB11, RABA1b RAB GTPase homolog A1B 0.02 OrthoFinder output from all 47 species
AT1G73640 RABA6a, AtRABA6a RAB GTPase homolog A6A 0.07 OrthoFinder output from all 47 species
AT4G18430 AtRABA1e, RABA1e RAB GTPase homolog A1E 0.02 OrthoFinder output from all 47 species
Adi_g049633 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081036 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g04605 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17596 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18147 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g31350 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g00731 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30591 RABA2b,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03446 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06019 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08482 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09205 ATRABA2A,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20651 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01569 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22189 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22467 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36000 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g42193 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29497.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27746 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40522 ATRABA2A,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05302 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_37703 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os01g54590.1 ATRABA1B, RAB11,... A-class RAB GTPase 0.07 OrthoFinder output from all 47 species
LOC_Os03g62600.1 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os05g20050.1 RAB-A2C,... A-class RAB GTPase 0.09 OrthoFinder output from all 47 species
LOC_Os05g44070.1 ATRABA1B, RAB11,... A-class RAB GTPase 0.06 OrthoFinder output from all 47 species
LOC_Os08g41340.1 AtRABA5d,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os09g15790.1 AtRABA1f,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g18286 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
MA_15386g0010 AtRABA1f, RABA1f A-class RAB GTPase 0.01 OrthoFinder output from all 47 species
MA_18685g0010 AtRABA5d, RABA5d A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Msp_g09136 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09974 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36456 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04704 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39855 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g02178 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03300 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g27644 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61287 ARA-1, ATRABA5E,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27739 No alias A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Smo146310 AtRABA1f, RABA1f Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
Solyc02g072180.3.1 ATHSGBP, RABA1d,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Solyc09g098170.4.1 AtRABA5d,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc12g010790.2.1 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Spa_g07579 AtRABA5a, RABA5a A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14805 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04947 RABA2b,... A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05879 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003625_P001 ATRABA5C, ARA4,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e020213_P001 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e027669_P001 ATRABA2A,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e031368_P002 RAB-A2C,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e032148_P001 ATRABA1B, RAB11,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e033825_P001 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 21 181
No external refs found!