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  5. Len_g02898

Len_g02898


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g02898

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00259620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g35030,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Adi_g003796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004372 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42628 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25584 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g32918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36381 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023921 No alias not classified & original description: CDS=1-2157 0.06 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.06 OrthoFinder output from all 47 species
Ceric.36G058800.1 Ceric.36G058800 not classified & original description: pacid=50569192... 0.04 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
Dac_g42748 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43235 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38628 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15736 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07547 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53025 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53554 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53968 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g05074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo126075 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Smo84339 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Smo96927 EMB2758 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Tin_g20335 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 104 151
IPR002885 Pentatricopeptide_repeat 205 252
IPR002885 Pentatricopeptide_repeat 608 656
IPR002885 Pentatricopeptide_repeat 509 537
IPR002885 Pentatricopeptide_repeat 78 102
IPR002885 Pentatricopeptide_repeat 308 335
IPR002885 Pentatricopeptide_repeat 408 438
IPR002885 Pentatricopeptide_repeat 584 605
IPR002885 Pentatricopeptide_repeat 179 201
IPR002885 Pentatricopeptide_repeat 481 507
IPR002885 Pentatricopeptide_repeat 683 707
No external refs found!