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  5. Len_g02905

Len_g02905 (TCX2, ATTCX2)


Aliases : TCX2, ATTCX2

Description : TCX/CPP-type transcription factor & original description: none


Gene families : OG0001700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001700_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g02905
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00042p00022530 TSO1, ATTSO1,... RNA biosynthesis.transcriptional activation.CPP1-like... 0.02 OrthoFinder output from all 47 species
AT3G22780 TSO1, ATTSO1 Tesmin/TSO1-like CXC domain-containing protein 0.05 OrthoFinder output from all 47 species
Adi_g089273 TCX2, ATTCX2 TCX/CPP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14241 TSO1, ATTSO1 TCX/CPP-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0037.g026007 SOL1 TCX/CPP-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G017200.1 TSO1, ATTSO1,... TCX/CPP-type transcription factor & original... 0.1 OrthoFinder output from all 47 species
Dac_g21027 SOL1 TCX/CPP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13047 SOL1 TCX/CPP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018021001 TCX2, ATTCX2 RNA biosynthesis.transcriptional activation.CPP1-like... 0.02 OrthoFinder output from all 47 species
GSVIVT01021837001 TSO1, ATTSO1 RNA biosynthesis.transcriptional activation.CPP1-like... 0.03 OrthoFinder output from all 47 species
GSVIVT01035818001 TCX2, ATTCX2 RNA biosynthesis.transcriptional activation.CPP1-like... 0.1 OrthoFinder output from all 47 species
Gb_38828 TCX2, ATTCX2 CPP1-like transcription factor 0.08 OrthoFinder output from all 47 species
LOC_Os03g43730.1 TCX2, ATTCX2,... CPP1-like transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os07g07974.1 TCX2, ATTCX2,... CPP1-like transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os12g41230.2 TCX2, ATTCX2,... CPP1-like transcription factor 0.04 OrthoFinder output from all 47 species
MA_15033g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_33846g0010 TCX2, ATTCX2 CPP1-like transcription factor 0.1 OrthoFinder output from all 47 species
Mp2g11520.1 TCX2, ATTCX2 CPP1-like transcription factor 0.06 OrthoFinder output from all 47 species
Msp_g31624 TCX2, ATTCX2 TCX/CPP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo443191 SOL1 RNA biosynthesis.transcriptional activation.CPP1-like... 0.02 OrthoFinder output from all 47 species
Solyc08g067150.4.1 TCX2, ATTCX2,... CPP1-like transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e003195_P002 TCX2, ATTCX2,... CPP1-like transcription factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005172 CRC 702 736
IPR005172 CRC 616 651
No external refs found!