Aliases : LSH1
Description : plant-specific ALOG-type transcription factor & original description: none
Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00153p00047660 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00155p00022580 | LSH6,... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G07090 | LSH6 | Protein of unknown function (DUF640) | 0.02 | OrthoFinder output from all 47 species | |
| AT1G78815 | LSH7 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
| AT3G04510 | LSH2 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
| AT5G28490 | LSH1 | Protein of unknown function (DUF640) | 0.03 | OrthoFinder output from all 47 species | |
| AT5G58500 | LSH5 | Protein of unknown function (DUF640) | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g06922 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g17249 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g27588 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene25077.t1 | LSH4, Aspi01Gene25077 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0093.g043261 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g31587 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G086500.1 | LSH4, Ceric.02G086500 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G090800.1 | LSH6, Ceric.14G090800 | plant-specific ALOG-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.22G071900.1 | LSH6, Ceric.22G071900 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g03257 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22007 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01020708001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01021215001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01021754001 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_15426 | LSH4 | Protein G1-like5 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_36840 | LSH4 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_39186 | No alias | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g28040.1 | LSH6, LOC_Os05g28040 | Protein G1-like9 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g39500.1 | LSH6, LOC_Os05g39500 | Protein G1-like8 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
| MA_12926g0010 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g00330.1 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g25188 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g04394 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g02051 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g32132 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53162 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0158.g023794 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Smo36560 | No alias | Protein G1-like4 OS=Oryza sativa subsp. indica | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g062470.4.1 | LSH10, Solyc07g062470 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g150147.1.1 | LSH10, Solyc07g150147 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g025280.1.1 | LSH4, Solyc09g025280 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g008000.1.1 | LSH10, Solyc10g008000 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g07735 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g22798 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g28138 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g22325 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e004570_P001 | LSH4, Zm00001e004570 | Protein G1-like4 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e019403_P001 | LSH6, Zm00001e019403 | Protein G1-like7 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e027222_P001 | LSH6, Zm00001e027222 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030343_P002 | LSH4, Zm00001e030343 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041238_P001 | LSH4, Zm00001e041238 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000347 | THO complex | IEP | HCCA |
| CC | GO:0000445 | THO complex part of transcription export complex | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006936 | ALOG_dom | 115 | 237 |
| No external refs found! |
