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  5. Len_g03874

Len_g03874


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03874

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
Adi_g086259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17265 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g04279 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g06037 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20830 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G000800.1 Ceric.27G000800 not classified & original description: pacid=50605275... 0.04 OrthoFinder output from all 47 species
Dac_g30160 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g05954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_33545 CRR22 RNA editing factor (MEF3) 0.05 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Lfl_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_653417g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18964 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005911 EMB2758 not classified & original description: CDS=1-2163 0.03 OrthoFinder output from all 47 species
Sam_g27934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09422 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30430 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 662 684
IPR002885 Pentatricopeptide_repeat 458 482
IPR002885 Pentatricopeptide_repeat 381 428
IPR002885 Pentatricopeptide_repeat 586 632
IPR002885 Pentatricopeptide_repeat 76 122
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 483 530
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 688 735
No external refs found!