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  5. Len_g04149

Len_g04149


Description : component *(uL1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00053p00163590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
AT2G27530 PGY1 Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
Ala_g18263 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g02409 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001522 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Cba_g66373 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020697.31 No alias 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os02g21660.1 LOC_Os02g21660 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os08g44380.1 LOC_Os08g44380 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_12000g0010 No alias component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g07870.1 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Ppi_g34689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12736 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g26155 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Solyc01g009520.4.1 Solyc01g009520 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc06g074300.4.1 Solyc06g074300 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g08346 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g08347 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g53937 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Tin_g10501 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e003939_P002 Zm00001e003939 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022063_P001 Zm00001e022063 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 21 210
No external refs found!