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  5. Len_g04546

Len_g04546


Description : component *(bS16m) of small mitoribosomal-subunit proteome & original description: none


Gene families : OG0002911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002911_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04546
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT4G34620 SSR16 small subunit ribosomal protein 16 0.02 OrthoFinder output from all 47 species
Adi_g002716 No alias component *(bS16m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Adi_g019302 SSR16 component *(bS16m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0066.g036077 No alias component *(bS16m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g20937 No alias component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.13G025200.1 Ceric.13G025200 component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021036.51 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Cre12.g494450 No alias 30S ribosomal protein S16, chloroplastic OS=Staurastrum... 0.1 OrthoFinder output from all 47 species
Dde_g11364 No alias component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g05272 SSR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g12130.1 SSR16 component mtRPS16 of small ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
Nbi_g00253 No alias component *(bS16m) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ppi_g19261 No alias component *(bS16c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008294 No alias component *(bS16m) of small mitoribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g10315 No alias component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Spa_g17692 No alias component *(bS16m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 71 132
No external refs found!