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  5. Len_g04833

Len_g04833 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04833

Target Alias Description ECC score Gene Family Method Actions
Cba_g14977 APUM8, PUM8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02347 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025489001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_41365 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 340 361
IPR001313 Pumilio_RNA-bd_rpt 517 547
IPR001313 Pumilio_RNA-bd_rpt 592 622
IPR001313 Pumilio_RNA-bd_rpt 480 513
IPR001313 Pumilio_RNA-bd_rpt 627 661
IPR001313 Pumilio_RNA-bd_rpt 700 733
IPR001313 Pumilio_RNA-bd_rpt 554 585
IPR001313 Pumilio_RNA-bd_rpt 663 682
IPR001313 Pumilio_RNA-bd_rpt 739 770
No external refs found!