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  5. Len_g06285

Len_g06285 (PGP1, ABCB1, ATPGP1)


Aliases : PGP1, ABCB1, ATPGP1

Description : not classified & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g06285

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00254310 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00128460 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g056640 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056650 ABCB19,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g24610 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G084300.1 ABCB19,... subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g12428 PGP2 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26046 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g33169 ABCB19,... subfamily ABCB transporter & original description: none 0.07 OrthoFinder output from all 47 species
Gb_07563 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Gb_08615 PGP11 ABC transporter B family member 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_08616 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_32125 PGP11 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_33057 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Gb_33058 ABCB19,... subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os05g47500.1 PGP9, LOC_Os05g47500 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Mp2g02910.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp2g21430.1 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35743 No alias subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Smo408755 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Solyc06g009290.4.1 PGP21, Solyc06g009290 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Spa_g47519 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041760_P001 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1 124
No external refs found!