Len_g07439 (GATA23)

Aliases : GATA23

Description : transcription factor *(A/B-GATA) & original description: none

Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g07439

Target	Alias	Description	ECC score	Gene Family Method
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT5G49300	GATA16	GATA transcription factor 16	0.02	OrthoFinder output from all 47 species
Als_g11812	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene06728.t1	GNC, GATA21,...	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69106.t1	GATA4, Aspi01Gene69106	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g06438	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g20454	GNC, GATA21	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26857	GATA12	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g12790.1	GATA22, CGA1,...	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
LOC_Os05g44400.1	GATA12, LOC_Os05g44400	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Nbi_g13065	GATA4	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30520	GATA2	transcription factor *(A/B-GATA) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07533	GATA15	transcription factor *(A/B-GATA) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015681	GATA12	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023073	GATA9	transcription factor *(A/B-GATA) & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0211.g025929	GATA22, CGA1, GNL	transcription factor *(A/B-GATA) & original description:...	0.03	OrthoFinder output from all 47 species
Zm00001e005940_P001	GATA4, Zm00001e005940	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species
Zm00001e009216_P001	GATA4, Zm00001e009216	transcription factor (GATA)	0.03	OrthoFinder output from all 47 species
Zm00001e037876_P002	GATA4, Zm00001e037876	transcription factor (GATA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004807	triose-phosphate isomerase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	285	317

External Links

No external refs found!

Len_g07439 (GATA23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation