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  5. Len_g07742

Len_g07742


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g07742

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011229 No alias not classified & original description: CDS=1-2535 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025464 No alias not classified & original description: CDS=1-2154 0.03 OrthoFinder output from all 47 species
Azfi_s0058.g034473 No alias not classified & original description: CDS=1-2799 0.06 OrthoFinder output from all 47 species
Azfi_s0134.g049391 No alias not classified & original description: CDS=1-2007 0.02 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070598 EMB2758 not classified & original description: CDS=1-1605 0.03 OrthoFinder output from all 47 species
Cba_g05522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34897 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G041400.1 Ceric.01G041400 not classified & original description: pacid=50592429... 0.03 OrthoFinder output from all 47 species
Ceric.02G080300.1 Ceric.02G080300 not classified & original description: pacid=50586181... 0.03 OrthoFinder output from all 47 species
Ceric.04G039100.1 Ceric.04G039100 not classified & original description: pacid=50630492... 0.03 OrthoFinder output from all 47 species
Ceric.06G080700.1 CRR22, Ceric.06G080700 not classified & original description: pacid=50619986... 0.03 OrthoFinder output from all 47 species
Ceric.09G060800.1 Ceric.09G060800 not classified & original description: pacid=50588416... 0.03 OrthoFinder output from all 47 species
Ceric.10G001600.1 EMB2758, Ceric.10G001600 not classified & original description: pacid=50613605... 0.04 OrthoFinder output from all 47 species
Ceric.11G040400.1 Ceric.11G040400 not classified & original description: pacid=50596720... 0.03 OrthoFinder output from all 47 species
Ceric.15G077000.1 EMB2261, Ceric.15G077000 not classified & original description: pacid=50639459... 0.03 OrthoFinder output from all 47 species
Ceric.18G008700.1 Ceric.18G008700 not classified & original description: pacid=50621984... 0.03 OrthoFinder output from all 47 species
Ceric.20G051600.1 Ceric.20G051600 not classified & original description: pacid=50567347... 0.03 OrthoFinder output from all 47 species
Ceric.21G088100.1 Ceric.21G088100 not classified & original description: pacid=50603070... 0.03 OrthoFinder output from all 47 species
Ceric.22G004400.1 Ceric.22G004400 not classified & original description: pacid=50613941... 0.04 OrthoFinder output from all 47 species
Ceric.22G051900.1 Ceric.22G051900 not classified & original description: pacid=50614015... 0.03 OrthoFinder output from all 47 species
Ceric.23G048800.1 Ceric.23G048800 not classified & original description: pacid=50611258... 0.03 OrthoFinder output from all 47 species
Ceric.27G064300.1 Ceric.27G064300 not classified & original description: pacid=50606133... 0.04 OrthoFinder output from all 47 species
Ceric.30G007900.1 Ceric.30G007900 not classified & original description: pacid=50608292... 0.03 OrthoFinder output from all 47 species
Ceric.34G069900.1 Ceric.34G069900 not classified & original description: pacid=50624195... 0.03 OrthoFinder output from all 47 species
Ceric.35G018800.1 Ceric.35G018800 not classified & original description: pacid=50580757... 0.03 OrthoFinder output from all 47 species
Ceric.36G059800.1 Ceric.36G059800 not classified & original description: pacid=50568853... 0.03 OrthoFinder output from all 47 species
Ceric.39G008600.1 Ceric.39G008600 not classified & original description: pacid=50582334... 0.03 OrthoFinder output from all 47 species
Dac_g03211 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18763 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08045 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08785 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26854 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37178 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43123 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50128 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03853 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04874 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22667 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23215 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24540 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36054 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38127 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.02 OrthoFinder output from all 47 species
Len_g04593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g41072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15421 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38344 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Ore_g06420 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g31933 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026676 No alias not classified & original description: CDS=1-2475 0.03 OrthoFinder output from all 47 species
Sam_g26655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06411 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49488 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53370 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55591 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43995 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 172 198
IPR002885 Pentatricopeptide_repeat 144 171
IPR002885 Pentatricopeptide_repeat 273 301
IPR002885 Pentatricopeptide_repeat 245 267
IPR002885 Pentatricopeptide_repeat 548 568
IPR002885 Pentatricopeptide_repeat 370 418
IPR002885 Pentatricopeptide_repeat 68 106
IPR002885 Pentatricopeptide_repeat 472 519
No external refs found!