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  5. Len_g08100

Len_g08100


Description : component *(bL19c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002345_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00210720 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT4G17560 No alias Ribosomal protein L19 family protein 0.05 OrthoFinder output from all 47 species
AT5G47190 No alias Ribosomal protein L19 family protein 0.03 OrthoFinder output from all 47 species
Adi_g002310 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g12532 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aspi01Gene53327.t1 Aspi01Gene53327 component *(bL19c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038191 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g10751 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.24G049700.1 Ceric.24G049700 component *(bL19c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre17.g734450 No alias 50S ribosomal protein L19, chloroplastic OS=Mesostigma viride 0.04 OrthoFinder output from all 47 species
Dac_g03571 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g05444 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002112001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_05695 No alias component psRPL19 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g43600.1 LOC_Os02g43600 component psRPL19 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Lfl_g33279 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_947876g0010 No alias 50S ribosomal protein L19-1, chloroplastic... 0.03 OrthoFinder output from all 47 species
Mp3g02740.1 No alias component mtRPL19 of large ribosomal subunit proteome.... 0.06 OrthoFinder output from all 47 species
Msp_g09265 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Nbi_g00593 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g04060 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g02445 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012817 No alias not classified & original description: CDS=1-963 0.08 OrthoFinder output from all 47 species
Sam_g17563 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc08g078010.3.1 Solyc08g078010 component psRPL19 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Spa_g04552 No alias component *(bL19c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Zm00001e015296_P001 Zm00001e015296 component psRPL19 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001857 Ribosomal_L19 116 214
No external refs found!