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  5. Len_g12231

Len_g12231


Description : not classified & original description: none


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12231

Target Alias Description ECC score Gene Family Method Actions
Adi_g014576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g092655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G052200.1 Ceric.02G052200 A1-class (Pepsin) protease & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G043400.1 Ceric.12G043400 not classified & original description: pacid=50601666... 0.03 OrthoFinder output from all 47 species
Cre12.g494550 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g05608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10520g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g08570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g12794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25324 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo413714 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g54015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026627_P001 Zm00001e026627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 24 91
IPR000504 RRM_dom 140 207
IPR000504 RRM_dom 290 356
No external refs found!