Len_g12523

Description : pectin methylesterase & original description: none

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g12523

Target	Alias	Description	ECC score	Gene Family Method
AT1G69940	ATPPME1, PPME1	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G07420	No alias	Pectin lyase-like superfamily protein	0.02	OrthoFinder output from all 47 species
Aev_g40489	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47438	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene49142.t1	Aspi01Gene49142	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010419	No alias	pectin methylesterase & original description: CDS=155-1288	0.03	OrthoFinder output from all 47 species
Azfi_s0108.g045229	No alias	pectin methylesterase & original description: CDS=1-615	0.02	OrthoFinder output from all 47 species
Azfi_s0188.g056807	No alias	pectin methylesterase & original description: CDS=1-903	0.03	OrthoFinder output from all 47 species
Cba_g34624	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G069000.1	Ceric.10G069000	pectin methylesterase & original description:...	0.02	OrthoFinder output from all 47 species
Dde_g20873	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_01460	No alias	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os01g53990.1	LOC_Os01g53990	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_304854g0010	ATPE11, PE11	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Mp4g01190.1	No alias	pectin methylesterase	0.01	OrthoFinder output from all 47 species
Msp_g42451	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11138	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	106	404

External Links

No external refs found!

Len_g12523

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation