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  5. Len_g13372

Len_g13372


Description : component *(uL10c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005040 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g13372
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00218670 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
AT5G13510 No alias Ribosomal protein L10 family protein 0.14 OrthoFinder output from all 47 species
Adi_g084574 No alias component *(uL10) of organelle large ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g04789 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Als_g52226 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aob_g00810 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g05054 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g27816 No alias component *(uL10) of organelle large ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.20G078900.1 Ceric.20G078900 component *(uL10c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020516.18 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Cre06.g272850 No alias Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Dac_g03164 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g03520 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g00714 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Gb_21730 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os03g17580.1 LOC_Os03g17580 component mtRPL10|psRPL10 of large ribosomal subunit... 0.09 OrthoFinder output from all 47 species
Lfl_g00434 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_483364g0010 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.07 OrthoFinder output from all 47 species
Mp4g07300.1 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.18 OrthoFinder output from all 47 species
Nbi_g00675 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g19831 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g30194 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g32458 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g11548 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c1_1330V3.1 Pp3c1_1330 Ribosomal protein L10 family protein 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008577 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Smo233811 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Solyc04g009540.1.1 Solyc04g009540 component mtRPL10|psRPL10 of large ribosomal subunit... 0.06 OrthoFinder output from all 47 species
Spa_g24954 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Zm00001e001284_P001 Zm00001e001284 component mtRPL10|psRPL10 of large ribosomal subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e038440_P001 Zm00001e038440 component mtRPL10|psRPL10 of large ribosomal subunit... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 58 145
No external refs found!